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Opinion

The era of complex science

13 May 2009

In many fields, senior researchers have entered a new era, at last accessing the underlying complexity of the systems they study. This is both gratifying and extremely challenging.


hockey stick graph

One version of the 'hockey stick graph', which depicts rising temperatures, as used by the IPCC in 2001.

Credit: IPCC

In my case, after more than 40 years of drilling down on narrow mechanisms, I now begin to comprehend how they together control that interface between viral and vertebrate genomes we call infection.

Take influenza, for example, which is generally most severe in the very young (no pre-existing immunity) and in the elderly as our immune systems fail with age.

Sometimes, however, we see a rapidly fatal disease outcome in healthy, young adults and only recently we have realised that in these cases a massive over-reaction occurs in the early 'innate' response.

We've known for years how antibodies and killer-T cells, which attack the virus-infected cells, work to protect us. This response is modulated by specialised molecules, called chemokines or cytokines. However, when excessively produced in these young adults, cytokines can cause severe vascular leakage and shock.

These people drown in their own lung fluids. In order to know what might be done medically, we need to understand which mechanisms should be enhanced or suppressed, perhaps with new drugs or bio-therapeutics.

Trying to deal with such issues has drawn us into the new, complex science called systems biology.

Over the past decade we've seen the sequencing of the human, mouse and other genomes, an extraordinary expansion of 'chip' technologies that allow massive data acquisition via laser-drive reader systems and enormously enhanced computing for the analysis of massive data sets.

The numbers are made freely available online, so that others can analyse parameters that are of particular interest to them.

We experimentalists would be lost without the skill sets of PhD astrophysicists and mathematical/computer wizards who've come across into biology. Their input in pulling together the vast spectra of inter-related data, drives the new sub-disciplines of genomics, proteomics, glycomics, lipidomics, transcriptomics and so forth.

Such 'discovery' science isn't going to replace traditional 'reductionist' approaches where we've identified a cell or molecule of interest and then gone in depth to understand what it actually does, but it does point-up a whole spectrum of new targets and inter-related mechanisms for detailed attention.

That's why contemporary biology is so exciting and why, for example, Australia can't afford to cut back on funding basic research in the molecular sciences.

Another great area of complex analysis that is of central importance for human wellbeing is climate science. Will our species survive the next millennium or so?

Understanding what is happening globally requires – as with complex biology – the specialised analysis of massive, inter-related data sets.

A few old geology and meteorology practitioners, in particular, are very uncomfortable with this process and over-state the case that their 'historical knowledge' is being ignored.

Surely everyone understands that there have been enormous changes in the world's climate through geological time some of which humanity, and certainly not 6.8 billion people, could not readily survive.

I've been advised to read geophysicist David Archer's The Long Thaw (published by Princeton University Press). You might also check the website of the Geological Society of America.

Being sceptical is fine, but any senior scientist who denies outright a position taken by the vast majority of his active, younger colleagues better be absolutely sure that he/she understands current and emerging data sets and deals with them in a way that is both competent and intellectually rigorous.

Perhaps you've read that the famous 'hockey stick' graph is fraudulent. Look, for example, at the U.S. National Oceanic and Atmospheric Administration's (NOAA) Palaeoclimatology website to see the validated version of the hockey stick graph.

Like biologists, these climate scientists have benefited from massive advances in computing and other technology. For example, new satellites are now able to measure the depth and not just the circumference of the ice fields.

This complex and continually evolving process requires pulling information together from a spectrum of disciplines ranging from astrophysics, to glaciology and marine biology. That's why the U.N.'s Intergovernmental Panel on Climate Change (IPCC) is so important.

A very broad spectrum of specialists collates published, peer-reviewed research from a variety of areas and summarises the information in ways that policy makers and others can comprehend. Despite what you might read the IPCC reports are nuanced and very conservatively written (perhaps too much so). Look for yourself.

Take, for example, the recent beat-up in a national newspaper that claimed the IPCC process is discredited because the ice mass in Antarctica is increasing (and, on average, the world is briefly cooling), though the West Antarctic Ice Sheet is breaking up.

If you look in the IPCC's reports, you will find that they actually predicted 5 to 20% more precipitation and ice over Antarctica through the next century, due to greater hydrological activity in the warmer regions of the Southern Hemisphere.

Though it is by no means imminent, the complete melt down of the West Antarctic Ice Sheet would cause sea levels to rise in excess of five metres. Dealing with that in ways that don't involve serious conflict will require a level of social and political sophistication that has hitherto been lacking on our small planet.

We can't afford to be self-serving and simplistic as we approach the complexities of the climate change issue, we have to think in the long term and we must do whatever we can now to moderate the situation.


Peter Doherty shared the 1996 Nobel Prize for Medicine. He is a Professor in the Department of Microbiology and Immunology at the University of Melbourne in Australia and also runs a laboratory at St Jude Children's Research Hospital in Memphis, Tennessee.

This opinion piece was originally published by the Australian R&D Review.